PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g020980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 408aa    MW: 46163.4 Da    PI: 5.2973
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g020980.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.33.4e-35141062102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkkel 93 
                       F+ k+ye+++d++ + ++sws+n++sf+v+++ +fa+++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++  F +g+ +l
  Sopen02g020980.1  14 FIAKTYEMVDDPSCDAIVSWSSNNKSFIVWNPPDFARDLLPRYFKHNNFSSFIRQLNTYGFRKIDPEK---------WEFANEGnFIRGQPHL 97 
                       9****************************************************************999.........*****988******** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  94 lekikrkks 102
                       l++i+r+k 
  Sopen02g020980.1  98 LKNIHRRKP 106
                       ******985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.86E-3510104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-6010104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.9E-3811104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3114104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MDEASCSTNA LPPFIAKTYE MVDDPSCDAI VSWSSNNKSF IVWNPPDFAR DLLPRYFKHN  60
NFSSFIRQLN TYGFRKIDPE KWEFANEGNF IRGQPHLLKN IHRRKPVHSH SAQNLHGLSS  120
PLTESERQGY KEDIQKLMHE NGSLHLDLQR HKQDHQGLEL QMQVLTERVQ HAEHRQKTMV  180
SALAHTLDRP VMDLSHMPQL QVNDRKRRFP GNSCLYNESD LEDTRGISSR ALSRENMNPP  240
SLLTMNTELL DQLESSLTFW EDVLQDVDQA GIRQNCLLQL DESTSCADSP AISYTQLNID  300
VGPKASGIDM NSEPNANITP EVAEPEDKAA VAGTATNVPT GVNDLFWEQF LTENPGSVDA  360
PEVQSERKDI GSKKNESKPV DSGKYWWNMK SVNSLAEQMG HLTPAEKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D1e-221110426129Heat shock factor protein 1
5d5v_B1e-221110426129Heat shock factor protein 1
5d5u_B1e-221110426129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063774.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_015063775.10.0PREDICTED: heat stress transcription factor A-4c
TrEMBLK4B8H50.0K4B8H5_SOLLC; Uncharacterized protein
STRINGSolyc02g072000.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-112heat shock transcription factor A4A